Since the past few weeks, I was working on evaluating the ontology matching algorithm on our dataset. After completing the code for performing evaluation and running it, 0 values for precision, recall and f-score were obtained. Manual inspection of the source ontologies revealed that the “class name” were uninformative and Continue reading Week 9: Documentation and finishing up with evaluation
During the last week I finished running the last of the correlation and regression tests, and we determined which tests made the most sense to include in the write-up. We’ve come up with a layout for our write-up, and starting last week and into this week, I’ll be putting together Continue reading Week Eight: Impact Results Write-up
After a week concentrating on reproducing the LIGO script on docker and ReproZip experiment, I encountered some issues with “broke” data dependencies and software dependencies when running script on different platforms, but finally figured out how to solve them.I also made document about reproducibility in light of the system dependencies issues for deployment Continue reading Week 8 : Reproducibility of Script-Based Workflows – Docker and ReproZip experiment
This week, I continued with the evaluation task that I was working on last week. Since the ontology matching algorithm was extremely slow, I looked into the AgreementMaker Lite (AML) tool to identify the main cause. I found out that the algorithm loads in the source and target ontologies in several Continue reading Week 8: Optimizing ontology matching algorithm
I have been sick this week, so most of work has been suspended. The main output: With the help from Dane, we are able to continue the list. I’ve found in USGS publication page hundreds of environmental health studies that used DataOne data. But I haven’t got a chance to Continue reading [intern]week 4 New/Emerging communities
As I am wrapping up the last week of the internship project with my mentors, I would like to take this opportunity to first thank my mentors, Amber Budden and Heather Soyka of DataONE and Viv Hutchison of U.S. Geological Survey for all of their help and guidance Continue reading Week 9: Evaluate Instrument for Education – Final Week
I’ve reviewed and edited the Literature Review from the first weeks of my project, and am currently still running some tests on the data. Or main finding right now is that there just doesn’t seem to be enough data usage to find any significance among the daily variance in downloads and Continue reading Week Seven: Evaluating our Analysese
For this week, I still worked on modifying LCA queries and started creating a Docker for the LIGO script. The main task is to make sure the container could contain YW, NW, as well as the capability to query across them using the bridge prototype, and ReproZip, then tried to answer Continue reading Week 7 : Reproducibility of Script-Based Workflows project
Continuing the work that I had started with the poster from last week, I was able to complete my first revision of the poster before my weekly meeting with my mentors. Consequently, during this week’s meeting, I was able to review the project paper, its accompanying abstract, and the poster Continue reading Week 8: Evaluate Instrument for Education – Paper, Poster, and DataONE Users Group Meeting
Last week I was able to combine several ontologies into a single owl file and load them into AgreementMaker Light. This week, I continued to work on evaluation. Following are the specific tasks I focused on: 1. For evaluation, we need to compare the matches obtained from our algorithm with Continue reading Week 7: Continuation of evaluation task